_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 8e-68
 Query name: gi|525343961|ref|NP_001266640.1| glutathione peroxidase [Oreochromis niloticus] >gi|259124047|gb|ACV93251.1| glutathione peroxidase [Oreochromis niloticus]
 Query range: 1-191  (total 191)

 Target: /data/www-rg/seblastian_results/341650405/tempfiles/temptarget.fasta
 Chromosome: OMLM01004028.1:subseq_65184,56294_ Strand: -
 Positions:
 -Exon 1  50925        51149
 -Exon 2  50000        50347

 Redox box: no

Query   MAGHLKRFYDLTAKLLSGETLRFSALKDKVVLIENVASLUGTTTRDYTQVNDLHSRYSAEGLVILGVPCNQFGHQ <---Intron---> ENCKNDEIL
        |||//||||//||||||||   || || ||||||||||||||| |||||/|||||||||/||||||||||||||| <   577bp    > || ||||||
Target  MAGNVKRFYEITAKLLSGEPFSFSTLKGKVVLIENVASLUGTTIRDYTQMNDLHSRYSAKGLVILGVPCNQFGHQ                ENAKNDEIL
        aggagaattgaagacctggctattacagaggcagaggtctgaaaagtacaagcctcttgagcgacggctactgcc                gagaaggac
        tcgatagtaatccattcgactgtcctagattttaatcctggcctgaacataatacgaccagttttgtcgaatgaa                aacaaaatt
        gtataagttgaataggtaacctccaggcagtctgtggtcaaatcgttcggccgccccccgacgcgtacctgtacg                gtcattacg
                                               *                                                            

Query   RSLKYVRPGNGFEPKFQLLEKVDVNGKDAHPLFVYLKEKLPFPCDDALGLMNDPKYIIWSPVCRNDVSWNFEKFLVGPDGEPYKRYSRNFLTSDIEADIK
        | ||||||||||||||||||||||||||||||||||||||||| |||  || |||/||||||||||/||||||||| ||||||/||||||||||||||||
Target  RCLKYVRPGNGFEPKFQLLEKVDVNGKDAHPLFVYLKEKLPFPSDDATALMTDPKFIIWSPVCRNDISWNFEKFLVSPDGEPYRRYSRNFLTSDIEADIK
        atcatgccgagtgcatcccgagggagaggccttgtcagacctcagggagcaagcataatacgtaagattatgatcgacgggctactaaatcaagagggaa
        ggtaatgcgagtacatattaatatagaacactttataaatctcgaacccttcacatttggctggaatcgataatttgcagacaggaggattcgatacata
        atggtctaatttaagcgcagggtgtagtcccgtctggagtacctttcgttgttcgcctgtagtgtcccgctggcgctccggccgcccatccttctgatta
                                                                                                            

Query   QLLKRIK
        /|| //|
Target  ELLNKVK
        gccaaga
        attaata
        gactgca
               
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 158 ; UGA-SECIS: 611

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = OMLM01004028.1:subseq_65184,56294_ Strand = - Positions = 49841 - 49771
 Found by:  Infernal (score=30.76) Covels (score=21.31)
 Stem2 length = 9   Apical loop length = 15   Insertion in stem2 = 0, 0
 Free Energy = -14.26

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ....(((((---....([[((({(((((((......--.........)))))))})))]])..--....)))))....
 target  CCAGUUUAC---CGAAUGAAGACACUCCUCAAAGCC--UUUUUGUGAGGGGAGUUUCUGAAAA--AUAUGUAAAACAC
                         ****          ^^^                        ****